33. R.W. Solava and T. Milenkovic, "Graphlet-based edge clustering reveals pathogen-interacting proteins", the 11th Annual European Conference on Computational Biology (ECCB), Basel, Switzerland, September 9-12, 2012.

32. R.W. Solava and T. Milenkovic, "From network topology to pathogenicity", the 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, California, July 15-17, 2012.

31. R.W. Solava and T. Milenkovic, "From network topology to pathogenicity", the 6th Annual Student Research Symposium, Department of Computer Science and Engineering, University of Notre Dame, November 2011. (The "best poster" award winner.)

30. R.S. Pinapati, M.A. Wacker, K.L. Olszewski, A. Tan, I. Lewis, G.H. Siwo, T. Milenkovic, M. Llinas, and M.T. Ferdig. "A network-based approach to probing the metabolic pathways of Plasmodium falciparum", The American Society of Tropical Medicine and Hygiene, 2011.

29. T. Milenkovic and N. Przulj, “Network topologyy complements sequence as a source of biological information”, ISMB/ECCB 2011, Vienna, Austria, 2011.

28. N. Przulj and T. Milenkovic, “Topological network alignment uncovers biological function and phylogeny”, ISMB/ECCB 2011, Vienna, Austria, 2011.

27. T. Milenkovic, “Network analysis uncovers key biological processes and pathways in molecular networks”, Network Biology SIG at ISMB/ECCB 2011, Vienna, Austria, 2011.

26. T. Milenkovic and N. Przulj, “Network topologyy complements sequence as a source of biological information”, Systems Biology-Networks Meeting at Cold Spring Harbor Laboratory, USA, 2011.

25. V. Memisevic, T. Milenkovic, and N. Przulj, “Complementarity of network and sequence information in homologous proteins”, RECOMB 2010, Lisbon, Portugal.

24. O. Kuchaiev, T. Milenkovic, V. Memisevic, W. Hayes, and N. Przulj, “Topological network alignment uncovers biological function and phylogeny”, RECOMB 2010, Lisbon, Portugal.

23. O. Kuchaiev, T. Milenkovic, V. Memisevic, W. L. Ng, W. Hayes, and N. Przulj, “Topological network alignment uncovers biological function, evolution, and disease”, Intelligent Systems for Molecular Biology (ISMB) 2010, Boston, USA.

22. N. Przulj, T. Milenkovic, O. Kuchaiev, V. Memisevic, W. L. Ng, W. Hayes, and A. Ganesan, “From biological networks to cancer and phylogeny”, RECOMB Computational Cancer Biology 2010, Oslo, Norway.

21. V. Memisevic, T. Milenkovic, and N. Przulj, “An integrative approach to modelling biological networks”, ICSB’09, Stanford, California.

20. O. Kuchaiev, T. Milenkovic, V. Memisevic, W. Hayes, N. Przulj “Topological network alignment uncovers biological function and phylogeny”, ICSB’09, Stanford, California.

19. T. Milenkovic, V. Memisevic, A. K. Ganesan, and N. Przulj, “Systems-level Cancer Gene Identification from Protein Interaction Network Topology Applied to Melanogenesis-related Interaction Networks”, ICSB’09, Stanford, California.

18. O. Kuchaiev, T. Milenkovic, V. Memisevic, W. Hayes, N. Przulj “Topological network alignment uncovers biological function and phylogeny”, ISMB/ECCB’09, Stockholm, Sweden.

17. T. Milenkovic, V. Memisevic, A. K. Ganesan, and N. Przulj, “Systems-level Cancer Gene Identification from Protein Interaction Network Topology Applied to Melanogenesis-related Interaction Networks”, ISMB/ECCB’09, Stockholm, Sweden.

16. R. Kaake, T. Milenkovic, C. M. Guerrero, N. Przulj, P. Kaiser, and L. Huang “Quantifying Cell Cycle-Dependent Changes in Protein Interacting Network of the Yeast 26S Proteasome”, 57th ASMS Conference on Mass Spectrometry, 2009.

15. T. Milenkovic, I. Filippis, M. Lappe, and N. Przulj, “Optimized null model for protein structure networks”, the 7th European Conference on Computational Biology, ECCB’08, Cagliary, Italy.

14. T. Milenkovic and N. Przulj, “Uncovering Biological Network Function via Graphlet Degree Signatures”, the 7th European Conference on Computational Biology, ECCB’08, Cagliary, Italy.

13. T. Milenkovic, J. Lai, and N. Przulj, “GraphCrunch: A Tool for Large Network Analyses”, the 7th European Conference on Computational Biology, ECCB’08, Cagliary, Italy.

12. T. Milenkovic and N. Przulj, “Uncovering disease genes and function via graphlet degree signatures”, the 9th International Conference on Systems Biology, ICSB'08, Gothenburg, Sweden.

11. T. Milenkovic, I. Filippis, M. Lappe, and N. Przulj, “Optimized null model for protein structure networks”, the 9th International Conference on Systems Biology, ICSB'08, Gothenburg, Sweden.

10. T. Milenkovic, J. Lai, and N. Przulj, “GraphCrunch: A tool for large network analyses”, the 9th International Conference on Systems Biology, ICSB'08, Gothenburg, Sweden.

9. T. Milenkovic, I. Filippis, M. Lappe, and N. Przulj, “Optimized Null Model for Residue Interaction Graphs”, the 16th Annual International Conference on Intelligent Systems for Molecular Biology, ISMB’08, Toronto, Canada.

8. T. Milenkovic and N. Przulj, “Uncovering Biological Network Function via Graphlet Degree Signatures”, the 16th Annual International Conference on Intelligent Systems for Molecular Biology, ISMB’08, Toronto, Canada.

7. C. Guerrero, T. Milenkovic, J. J. Jones, N. Przulj, P. Kaiser, and L. Huang, “Characterizing the 26S Proteasome Network in Yeast using a Quantitative In-Vivo Crosslinking Strategy and PPI Network Analysis”, 56th ASMS Conference on Mass Spectrometry, Denver, Colorado, 2008.

6. T. Milenkovic and N. Przulj, “Protein Signatures: Interplay of Topology and Biology”, RECOMB Satellite Conference on Systems Biology 2007, University of California, San Diego, November 30 – December 1, 2007. 

5. T. Milenkovic, J. Lai, and N. Przulj, “GraphCrunch: A Tool for Large Network Analyses”, RECOMB Satellite Conference on Systems Biology 2007, University of California, San Diego, November 30 – December 1, 2007. 

4. T. Milenkovic, I. Filippis, M. Lappe, and N. Przulj, “Optimized Null Model for Residue Interaction Graphs”, RECOMB Satellite Conference on Systems Biology 2007, University of California, San Diego, November 30 – December 1, 2007. 

3. T. Milenkovic, J. Lai, and N. Przulj, “GraphCrunch: A Tool for Large Network Analyses”, the 8th International Conference on Systems Biology, ICSB'07, Long Beach, CA, October 1-6, 2007.

2. T. Milenkovic, I. Filippis, M. Lappe, and N. Przulj, “Optimized Null Model for Residue Interaction Graphs”, the 8th International Conference on Systems Biology, ICSB'07, Long Beach, CA, October 1-6, 2007.

1. T. Milenkovic, J. Lai, and N. Przulj, “GraphCrunch: A Tool for Large Network Analyses”, the 15th Annual International  Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB),  ISMB/ECCB'07, Vienna, Austria, July 21-25, 2007.