sand_uncompress_reads - uncompress sequence data
sand_uncompress_reads [-qvh] [infile] [outfile]
sand_uncompress_reads reads sequence data in compressed FASTA format (cfa) used by sand_filter_master(1) and sand_align_master(1).
and produces output in the standard FASTA format.
If the output file is omitted, standard output is used.
if the input file is omitted, standard input is used.
After completing the compression, this program will output a summary
line of sequences and bytes compressed.
| -q ||Quiet mode: suppress summary line.
| -h ||Display version information.
| -v ||Show help text.
On success, returns zero. On failure, returns non-zero.
To uncompress mydata.cfa into mydata.fasta:
% sand_uncompress_reads mydata.cfa mydata.fa
The Cooperative Computing Tools are Copyright (C) 2003-2004 Douglas Thain and Copyright (C) 2005-2011 The University of Notre Dame. This software is distributed under the GNU General Public License. See the file COPYING for details.
Cooperative Computing Tools Documentation
SAND User Manual
CCTools 3.7.2 released on 04/23/2013